NAME
Bio::KEGG::ko- Perl module to fetch details of KEGG file 'pathway'.
DESCRIPTION
Fetch data from a Bio::KEGGI::pathway object
AUTHOR
Haizhou Liu, zeroliu-at-gmail-dot-com
VERSION
0.1.5
METHODS
ec
Name: ec
Desc: Get ecs for KEGG entry ENZYME
$ra_ec = [ $ec, ... ];
Usage: $o_kegg->ec()
Args:
Return: A reference to an array
drug
Name: drug
Desc: Get drug ids for KEGG pathway entry DRUG.
$ra_drug = [ $drug, ... ];
Usage: $o_kegg->drug()
Args:
Return: A reference to an array
map
Name: map
Desc: Get KEGG pathway entry PATHWAY_MAP.
Usage: $o_kegg->map()
Args:
Return: A string
organism
Name: organism
Desc: Get organism description for KEGG pathway entry ORGANISM.
Usage: $o_kegg->organism()
Args:
Return: A string
org
Name: org
Desc: Get abbrivated oeganism information for KEGG pathway entry
ORGANISM.
Usage: $o_kegg->org()
Args:
Return: A string
gene
Name: gene
Disc: Get KEGG entry GENE information
$rh_gene = {
'entry' => $entry,
'name' => [ $name, ... ],
'ko' => [ $ko, ... ],
'ec' => [ $ec, ... ],
};
Usage: $o_kegg->gene()
Args:
Return: A reference to a hash.
Note: This method returns different from the method of Bio::KEGG::ko.
orthology
Name: orthology
Disc: Get orthology ids for KEGG entry ORTHOLOGY.
$ra_orthology = [ $orth_id, ... ];
Usage: $o_kegg->orthology
Args:
Return: A reference to an array
reaction
Name: reaction
Desc: Get reaction ids for KEGG entry REACTION
$ra_reaction = [ $reaction_id, ... ];
Usage: $o_kegg->reaction()
Args:
Return: A reference to an array
compound
Name: compound
Disc: Get compound ids for KEGG entry COMPOUND
$ra_compound = [ $compound_id, ... ];
Usage: $o_kegg->compound()
Args:
Return: A reference to an array
rel_pathway
Name: compound
Disc: Get related pathway ids for KEGG entry REL_PATHWAY
$ra_rel_pathway = [ $rel_pathway_id, ... ];
Usage: $o_kegg->rel_pathway()
Args:
Return: A reference to an array
ko_pathway
Name: ko_pathway
Disc: Get related ko pathway id for KEGG entry KO_PATHWAY
Usage: $o_kegg->compound()
Args:
Return: A string