NAME

bp_split_seq - splits a sequence into equal sized chunks with an optional overlapping range

SYNOPSIS

bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in

DESCRIPTION

The script will split sequences into chunks

Mandatory Options:

            

              
              
-c  Desired length of the resulting sequences.
-f  Input file (must be FASTA format).
            
          

Special Options:

            

              
              
-o  Overlapping range between the resulting sequences.
-i  Create an index file with the resulting sequence files. This is
    useful if you want to pass this list as input arguments into
    another programs (i.e. CLUSTAL, HMMER, etc.).
            
          

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

            

              
              
bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
            
          

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

            

              
              
https://github.com/bioperl/bioperl-live/issues
            
          

AUTHORS

            

              
              
Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at intelligenomes.comE<gt>
(some enhancements)