- AUTHOR - Jason Stajich
Bio::Align::StatisticsI - Calculate some statistics for an alignment
Give standard usage here
Describe the interface here
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
firstname.lastname@example.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : distance Usage : my $distance_mat = $stats->distance(-align => $aln, -method => $method); Function: Calculates a distance matrix for all pairwise distances of sequences in an alignment. Returns : Array ref Args : -align => Bio::Align::AlignI object -method => String specifying specific distance method (implementing class may assume a default)
Title : available_distance_methods Usage : my @methods = $stats->available_distance_methods(); Function: Enumerates the possible distance methods Returns : Array of strings Args : none