- AUTHOR - Jason Stajich
Bio::AlignIO::psi - Read/Write PSI-BLAST profile alignment files
This module will parse PSI-BLAST output of the format seqid XXXX
This is a parser for psi-blast blocks.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::AlignIO::psi->new(); Function: Builds a new Bio::AlignIO::psi object Returns : Bio::AlignIO::psi Args :
Title : next_aln Usage : $aln = $stream->next_aln() Function: returns the next alignment in the stream Returns : Bio::Align::AlignI object Args : NONE
Title : write_aln Usage : $stream->write_aln(@aln) Function: writes the NCBI psi-format object (.aln) into the stream Returns : 1 for success and 0 for error Args : Bio::Align::AlignI object