Bio::Grid::Run::SGE::Util::Blast - basic blast utitlity functions for cluster-wide operations
use Bio::Grid::Run::SGE::Util::Blast qw(formatdb);
formatdb takes the following parameters:
%config = ( db_seq_files => 'sequence files used for db creation', input_files? => 'is used for db creation if seq_db_files is not defined', blast_db_name => 'database name', db_type => 'database type', blast_db_dir => 'directory for blast database', no_prompt => 0, #don't ask any questions, just do it )
jw bargsten, <joachim.bargsten at wur.nl>
<joachim.bargsten at wur.nl>
To install Bio::Grid::Run::SGE, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Grid::Run::SGE
CPAN shell
perl -MCPAN -e shell install Bio::Grid::Run::SGE
For more information on module installation, please visit the detailed CPAN module installation guide.