Bio::Matrix::IO::mlagan - A parser for the mlagan substitution matrix
my $parser = Bio::Matrix::IO->new(-format => 'mlagan',
-file => 'nucmatrix.txt');
my $matrix = $parser->next_matrix;
my $gap_open = $parser->gap_open;
my $gap_continue = $parser->gap_continue;
Use to read in and write out substitution matrix files suitable for use by mlagan.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Matrix::IO::mlagan->new();
Function: Builds a new Bio::Matrix::IO::mlagan object
Returns : an instance of Bio::Matrix::IO::mlagan
Title : next_matrix
Usage : my $matrix = $obj->next_matrix();
Function: parses a matrix file
Returns : L<Bio::Matrix::Mlagan>
Args : none
Title : write_matrix
Usage : $obj->write_matrix($matrix)
Function: Write out a matrix in mlagan format
Returns : n/a
Args : L<Bio::Matrix::Generic>
To install BioPerl, copy and paste the appropriate command in to your terminal.
perl -MCPAN -e shell
For more information on module installation, please visit the detailed CPAN module installation guide.