- AUTHOR - Jason Stajich
Bio::Matrix::IO::phylip - A parser for PHYLIP distance matricies
use Bio::Matrix::IO; my $parser = Bio::Matrix::IO->new(-format => 'phylip', -file => 't/data/phylipdist.out'); my $matrix = $parser->next_matrix;
This is a parser for PHYLIP distance matrix output.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
email@example.com - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Matrix::IO::phylip->new(); Function: Builds a new Bio::Matrix::IO::phylip object Returns : an instance of Bio::Matrix::IO::phylip Args :
Title : next_matrix Usage : my $matrix = $parser->next_matrix Function: Get the next result set from parser data Returns : L<Bio::Matrix::PhylipDist> Args : none
Title : write_matrix Usage : $matio->write_matrix($matrix) Function: Write out a matrix in the phylip distance format Returns : none Args : L<Bio::Matrix::PhylipDist>