- AUTHOR - Jason Stajich
Bio::Matrix::IO::scoring - A parser for PAM/BLOSUM matricies
use Bio::Matrix::IO; my $parser = Bio::Matrix::IO->new(-format => 'scoring', -file => 'BLOSUM50'); my $matrix = $parser->next_matrix;
Describe the object here
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AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Matrix::IO::scoring->new(); Function: Builds a new Bio::Matrix::IO::scoring object Returns : an instance of Bio::Matrix::IO::scoring Args :
Title : next_matrix Usage : my $matrux = $parser->next_matrix Function: parses a scoring matrix (BLOSUM,PAM styles) Returns : L<Bio::Matrix::Scoring> Args : none
Title : write_matrix Usage : $matio->write_matrix($matrix) Function: Write out a matrix in the BLOSUM/PAM format Returns : none Args : L<Bio::Matrix::Scoring>