- AUTHOR - James Thompson
Bio::Matrix::PSM::IO::psiblast - PSM psiblast parser
See Bio::Matrix::PSM::IO for documentation
Parser for ASCII matrices from PSI-BLAST (blastpgp program in BLAST distribution).
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Title : new Usage : my $psmIO = Bio::Matrix::PSM::IO->new(-format=>'psiblast', -file=>$file); Function: Associates a file with the appropriate parser Throws : Example : Args : Returns : Bio::Matrix::PSM::ProtMatrix->new(@args);
Title : next_psm Usage : my $psm = $psmIO->next_psm(); Function: Reads the next PSM from the input file, associated with this object Throws : None Returns : Bio::Matrix::PSM::ProtPsm object Args : none