Bio::Search::BlastStatistics - An object for Blast statistics
# this is a wrapper to hold the statistics from a Blast report
my $bs = $result->get_statistics();
# you can get a statistic generically, like this:
my $kappa = $bs->get_statistic("kappa");
# or specifically, like this:
my $kappa2 = $bs->get_kappa();
This is a basic container to hold the statistics returned from a Blast.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : get_statistic
Usage : $statistic_object->get_statistic($statistic_name);
Function: Get the value of a statistic named $statistic_name
Returns : A scalar that should be a string
Args : A scalar that should be a string
Title : set_statistic
Usage : $statistic_object->set_statistic($statistic_name => $statistic_value);
Function: Set the value of a statistic named $statistic_name to $statistic_value
Returns : Void
Args : A hash containing name=>value pairs
To install BioPerl, copy and paste the appropriate command in to your terminal.
perl -MCPAN -e shell
For more information on module installation, please visit the detailed CPAN module installation guide.