++ed by:
GENEHACK DEMIAN MAJENSEN THALJEF CJFIELDS

6 PAUSE users
6 non-PAUSE users.

Christopher Fields
and 1 contributors

NAME

Bio::SeqIO::tigrxml - Parse TIGR (new) XML

SYNOPSIS

  use Bio::SeqIO;
  my $in = Bio::SeqIO->new(-format => 'tigrcoordset',
                          -file   => 'file.xml');

  while( my $seq = $in->next_seq ) {
     # do something...
  }

DESCRIPTION

This is a parser for TIGR Coordset XML for their in-progress annotation dbs.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

Email jason-at-bioperl-dot-org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _