The London Perl and Raku Workshop takes place on 26th Oct 2024. If your company depends on Perl, please consider sponsoring and/or attending.


Bio::Tools::Profile - parse Profile output


 use Bio::Tools::Profile;
 my $profile_parser = Bio::Tools::Profile->new(-fh =>$filehandle );
 while( my $profile_feat = $profile_parser->next_result ) {
       push @profile_feat, $profile_feat;


 Parser for Profile output


Mailing Lists

 User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.                  - General discussion  - About the mailing lists


Please direct usage questions or support issues to the mailing list:

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

AUTHOR - Balamurugan Kumarasamy



 The rest of the documentation details each of the object methods.
 Internal methods are usually preceded with a _


 Title   : new
 Usage   : my $obj = Bio::Tools::Profile->new();
 Function: Builds a new Bio::Tools::Profile object
 Returns : Bio::Tools::Profile
 Args    : -filename
           -fh ($filehandle)


 Title   : next_result
 Usage   : my $feat = $profile_parser->next_result
 Function: Get the next result set from parser data
 Returns : L<Bio::SeqFeature::FeaturePair>
 Args    : none


 Title   : create_feature
 Usage   : my $feat= $profile_parser->create_feature($feature)
 Function: creates a Bio::SeqFeature::FeaturePair object
 Returns : L<Bio::SeqFeature::FeaturePair>
 Args    :