Bioinfo::App::Cmd::Blast::Cmd::ParseXML - parse XML file of blast+(with outfmt=5) into tabular format
version 0.1.15
use Bioinfo::App::Cmd::Blast::Cmd::ParseXML; Bioinfo::App::Cmd::Blast::Cmd::ParseXML->new_with_cmd; ...
parse XML file of blast+(with outfmt=5) into tabular format. In addition, the definition of a sequence is added to the last column of each row, as which is usually important to our job.
a file of xml format generated by blast+
the outfile name of tabular format(similar to the result of blast+ with parameter outfmt=6.
the iteration routine used by Twig;
Yan Xueqing <yanxueqing621@163.com>
This software is copyright (c) 2017 by Yan Xueqing.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bioinfo, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bioinfo
CPAN shell
perl -MCPAN -e shell install Bioinfo
For more information on module installation, please visit the detailed CPAN module installation guide.