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NAME

Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit - submit blast after splitting a fasta file into multiple files;

VERSION

version 0.1.15

SYNOPSIS

  use Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit;

  Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit->new_with_cmd;

DESCRIPTION

this module splits a fasta file into multiple files, then submit these files on parallel.

ATTRIBUTES

input

The input file is a file of fasta format

num

number of files that the fasta file will be split

db

the database that blast will use

type

blast

cpu

max_target_seqs

evalue

outfmt

outdir

prefix

the prefix of the split file

METHODS

execute

AUTHOR

Yan Xueqing <yanxueqing621@163.com>

COPYRIGHT AND LICENSE

This software is copyright (c) 2017 by Yan Xueqing.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.