CLIPSeqTools::PreprocessApp::cut_adaptor - Cut the adaptor sequence from the 3'end of reads.
clipseqtools-preprocess cut_adaptor [options/parameters]
Cut the adaptor sequence from the 3'end of reads. Uses cutadapt to remove the adaptor which is usually ligated at the 3'end of reads.
Input. --fastq <Str> FastQ file with the reads. --adaptor <Str> adaptor sequence. Output --o_prefix <Str> output path prefix. Script will create and add extension to path. [Default: ./] Other options. --cutadapt_path <Str> path to cutadapt executable. [Default: cutadapt]. -v --verbose print progress lines and extra information. -h -? --usage --help print help message