CLIPSeqTools::PreprocessApp::sam_to_sqlite - Load a SAM file in an SQLite database.
clipseqtools-preprocess sam_to_sqlite [options/parameters]
Store alignments from a SAM file into and SQLite database. If SAM tag XC:i exists it will be used as the copy number of the record.
Input options. --sam_file <Str> sam file to be stored in database. If not specified STDIN is used. --records_class <Str> type of records stored in SAM file. [Default: GenOOx::Data::File::SAMstar::Record] Database options. --database <Str> database name or path. Will be created. --table <Str> database table. Will be created. --drop <Str> drop table if it already exists. Other options. -v --verbose print progress lines and extra information. -h -? --usage --help print help message
To install CLIPSeqTools, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CLIPSeqTools
CPAN shell
perl -MCPAN -e shell install CLIPSeqTools
For more information on module installation, please visit the detailed CPAN module installation guide.