++ed by:
ZMUGHAL

1 PAUSE user

Emmanouil "Manolis" Maragkakis
and 1 contributors

NAME

CLIPSeqTools::Role::Option::Library - Role to enable reading a library with reads from the command line

SYNOPSIS

Role to enable reading a library with reads from the command line

  Defines options.
      -driver <Str>          driver for database connection (eg. mysql, SQLite).
      -database <Str>        database name or path to database file for file
                             based databases (eg. SQLite).
      -table <Str>           database table.
      -host <Str>            hostname for database connection.
      -user <Str>            username for database connection.
      -password <Str>        password for database connection.
      -records_class <Str>   type of records stored in database (Default:
                             GenOO::Data::DB::DBIC::Species::Schema::
                             SampleResultBase::v3).
      -filter <Filter>       filter library. Option can be given multiple times.
                             Syntax: column_name="pattern"
                             e.g. -filter deletion="def" -filter rmsk="undef"
                             to keep reads with deletions and not repeat
                             masked.  e.g.  -filter query_length=">31" -filter
                             query_length="<=50" to keep reads longer than 31
                             and shorter or   equal to 50.  Supported
                             operators: >, >=, <, <=, =, !=, def, undef.

  Provides attributes.
      reads_collection      reads collection that is read from the specified
                            source.