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CLIPSeqTools::Role::Option::Library - Role to enable reading a library with reads from the command line
Role to enable reading a library with reads from the command line
Defines options. -driver <Str> driver for database connection (eg. mysql, SQLite). -database <Str> database name or path to database file for file based databases (eg. SQLite). -table <Str> database table. -host <Str> hostname for database connection. -user <Str> username for database connection. -password <Str> password for database connection. -records_class <Str> type of records stored in database (Default: GenOO::Data::DB::DBIC::Species::Schema:: SampleResultBase::v3). -filter <Filter> filter library. Option can be given multiple times. Syntax: column_name="pattern" e.g. -filter deletion="def" -filter rmsk="undef" to keep reads with deletions and not repeat masked. e.g. -filter query_length=">31" -filter query_length="<=50" to keep reads longer than 31 and shorter or equal to 50. Supported operators: >, >=, <, <=, =, !=, def, undef. Provides attributes. reads_collection reads collection that is read from the specified source.