extract-mcl-out.pl - Extract orthogroups (FASTA files) from MCL clusters
version 0.210170
extract-mcl-out.pl <infiles> --database=<file> [optional arguments]
Path to input group definition files [repeatable argument]. Input file format follows OrthoMCL <groups.txt> (or OrthoFinder <OrthologousGroups.txt>) format. Each file will be turned into a new subdirectory populated with FASTA files corresponding to all the group definition of the input file.
Path to the FASTA file containing the sequence database.
Print the usual program information
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2021 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::MUST::Tools::Mcl, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MUST::Tools::Mcl
CPAN shell
perl -MCPAN -e shell install Bio::MUST::Tools::Mcl
For more information on module installation, please visit the detailed CPAN module installation guide.