• NAME
• VERSION
• SYNOPSIS
• DESCRIPTION
• METHODS
  • get_taxid_from_seq_id
  • get_taxid_from_legacy_seq_id
  • get_taxonomy_from_seq_id
  • get_taxonomy_with_levels_from_seq_id
  • get_label_from_seq_id
  • get_common_taxonomy_from_seq_ids
  • attach_taxonomies_to_terminals
  • attach_taxonomies_to_internals
  • attach_taxa_to_entities
  • gi_mapper
  • tab_mapper
  • tax_mapper
  • tax_filter
  • tax_criterion
  • tax_category
  • tax_classifier
  • tax_labeler_from_systematic_frame
  • tax_labeler_from_list
  • load_color_scheme
  • eq_tax
  • setup_taxdir
• I/O METHODS
  • new_from_cache
  • update_cache
• ALIASES
  • fetch_lineage
  • compute_lca
• AUTHOR
• CONTRIBUTORS
• COPYRIGHT AND LICENSE

NAME

Bio::MUST::Core::Taxonomy - NCBI Taxonomy one-stop shop

VERSION

version 0.191300

SYNOPSIS

    # TODO

DESCRIPTION

    # TODO

METHODS

get_taxid_from_seq_id

get_taxid_from_legacy_seq_id

get_taxonomy_from_seq_id

get_taxonomy_with_levels_from_seq_id

get_label_from_seq_id

get_common_taxonomy_from_seq_ids

attach_taxonomies_to_terminals

attach_taxonomies_to_internals

attach_taxa_to_entities

gi_mapper

tab_mapper

tax_mapper

tax_filter

tax_criterion

tax_category

tax_classifier

tax_labeler_from_systematic_frame

tax_labeler_from_list

load_color_scheme

eq_tax

setup_taxdir

I/O METHODS

new_from_cache

update_cache

ALIASES

fetch_lineage

compute_lca

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

CONTRIBUTORS

• Loic MEUNIER <loic.meunier@doct.uliege.be>

• Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

                    cpanm Bio::MUST::Core::Taxonomy

                    perl -MCPAN -e shell
                    install Bio::MUST::Core::Taxonomy