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- Distribution: Bio-MUST-Core
- Module version: 0.210380
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- License: perl_5
- Perl: v5.13.2
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- NAME
- VERSION
- SYNOPSIS
- DESCRIPTION
- METHODS
- get_taxid_from_seq_id
- get_taxid_from_legacy_seq_id
- get_taxonomy_from_seq_id
- get_taxid_from_taxonomy
- get_taxonomy_with_levels_from_seq_id
- get_taxa_from_taxid
- get_nexus_label_from_seq_id
- get_common_taxonomy_from_seq_ids
- attach_taxonomies_to_terminals
- attach_taxonomies_to_internals
- attach_taxa_to_entities
- gi_mapper
- tab_mapper
- tax_mapper
- tax_filter
- tax_criterion
- tax_category
- tax_classifier
- tax_labeler_from_systematic_frame
- tax_labeler_from_list
- load_color_scheme
- eq_tax
- setup_taxdir
- I/O METHODS
- ALIASES
- AUTHOR
- CONTRIBUTORS
- COPYRIGHT AND LICENSE
NAME
Bio::MUST::Core::Taxonomy - NCBI Taxonomy one-stop shop
VERSION
version 0.210380
SYNOPSIS
# TODODESCRIPTION
# TODOMETHODS
get_taxid_from_seq_id
get_taxid_from_legacy_seq_id
get_taxonomy_from_seq_id
get_taxid_from_taxonomy
get_taxonomy_with_levels_from_seq_id
get_taxa_from_taxid
get_nexus_label_from_seq_id
get_common_taxonomy_from_seq_ids
attach_taxonomies_to_terminals
attach_taxonomies_to_internals
attach_taxa_to_entities
gi_mapper
tab_mapper
tax_mapper
tax_filter
tax_criterion
tax_category
tax_classifier
tax_labeler_from_systematic_frame
tax_labeler_from_list
load_color_scheme
eq_tax
setup_taxdir
I/O METHODS
new_from_cache
update_cache
ALIASES
fetch_lineage
compute_lca
AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>
CONTRIBUTORS
Loic MEUNIER <loic.meunier@doct.uliege.be>
Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>
COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
