NAME

Bio::MUST::Core::Taxonomy - NCBI Taxonomy one-stop shop

VERSION

version 0.210380

SYNOPSIS

    # TODO

DESCRIPTION

    # TODO

METHODS

get_taxid_from_seq_id

get_taxid_from_legacy_seq_id

get_taxonomy_from_seq_id

get_taxid_from_taxonomy

get_taxonomy_with_levels_from_seq_id

get_taxa_from_taxid

get_nexus_label_from_seq_id

get_common_taxonomy_from_seq_ids

attach_taxonomies_to_terminals

attach_taxonomies_to_internals

attach_taxa_to_entities

gi_mapper

tab_mapper

tax_mapper

tax_filter

tax_criterion

tax_category

tax_classifier

tax_labeler_from_systematic_frame

tax_labeler_from_list

load_color_scheme

eq_tax

setup_taxdir

I/O METHODS

new_from_cache

update_cache

ALIASES

fetch_lineage

compute_lca

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

CONTRIBUTORS

  • Loic MEUNIER <loic.meunier@doct.uliege.be>

  • Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.