Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full clusters each time
version 3.11.0
Run CDhit iteratively with reducing thresholds, removing full clusters each time use Bio::Roary::IterativeCdhit;
my $obj = Bio::Roary::IterativeCdhit->new( output_cd_hit_filename => 'output_cd_hit_filename.fa', output_combined_filename => 'output_combined_filename.fa', number_of_input_files => 5, output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa', ); $obj->run;
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::Roary, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Roary
CPAN shell
perl -MCPAN -e shell install Bio::Roary
For more information on module installation, please visit the detailed CPAN module installation guide.