35 results (0.043 seconds)
Joachim Bargsten
Documentation
Bio::Grid::Run::SGE::ClusterScript - Write cluster scripts for Bio::Grid::Run::SGE
Bio::Grid::Run::SGE::Log::Notify - get notified if a job finishes
cl_iprscan.pl - clusterscript to run interpro scans
cl_muscle.pl - show your muscles on the cluster.
jclone - clone job directory
Modules
Bio::Grid::Run::SGE - Distribute (biological) analyses on the local SGE grid
Bio::Grid::Run::SGE::Index - Provides an interface to load index classes.
Bio::Grid::Run::SGE::Index::Dummy - dummy index for testing purposes
Bio::Grid::Run::SGE::Index::FileList - Creates an index from a list of files
Bio::Grid::Run::SGE::Iterator - Provides an interface to load iterator classes.
Bio::Grid::Run::SGE::Iterator::AllvsAll - Runs all elements of one index against each other
Bio::Grid::Run::SGE::Iterator::AllvsAllNoRep - Runs all elements of one index against each other, without repetitions
Bio::Grid::Run::SGE::Iterator::AvsB - iterate over two different indices
Bio::Grid::Run::SGE::Iterator::Consecutive - iterate consecutively through an index
Bio::Grid::Run::SGE::Role::Indexable - Basic role for all indices
Bio::Grid::Run::SGE::Role::Iterable - iterator role/base class
Bio::Grid::Run::SGE::Util - Utility functions for Bio::Grid::Run::SGE
Bio::Grid::Run::SGE::Util::Blast - basic blast utitlity functions for cluster-wide operations
Bio::Grid::Run::SGE::Worker - Run the cluster script
FindBinNew - Locate directory of original perl script
Provides
Bio::Grid::Run::SGE::Config in lib/Bio/Grid/Run/SGE/Config.pm
Bio::Grid::Run::SGE::Index::General in lib/Bio/Grid/Run/SGE/Index/General.pm
Bio::Grid::Run::SGE::Index::List in lib/Bio/Grid/Run/SGE/Index/List.pm
Bio::Grid::Run::SGE::Index::ListFromFile in lib/Bio/Grid/Run/SGE/Index/ListFromFile.pm
Bio::Grid::Run::SGE::Index::Range in lib/Bio/Grid/Run/SGE/Index/Range.pm
Bio::Grid::Run::SGE::Iterator::Dummy in lib/Bio/Grid/Run/SGE/Iterator/Dummy.pm
Bio::Grid::Run::SGE::Iterator::List in lib/Bio/Grid/Run/SGE/Iterator/List.pm
Bio::Grid::Run::SGE::Iterator::None in lib/Bio/Grid/Run/SGE/Iterator/None.pm
Bio::Grid::Run::SGE::Log::Analysis in lib/Bio/Grid/Run/SGE/Log/Analysis.pm
Bio::Grid::Run::SGE::Log::Notify::Jabber in lib/Bio/Grid/Run/SGE/Log/Notify/Jabber.pm
Bio::Grid::Run::SGE::Log::Notify::Mail in lib/Bio/Grid/Run/SGE/Log/Notify/Mail.pm
Bio::Grid::Run::SGE::Log::Worker in lib/Bio/Grid/Run/SGE/Log/Worker.pm
Bio::Grid::Run::SGE::Master in lib/Bio/Grid/Run/SGE/Master.pm
Bio::Grid::Run::SGE::Util::ExampleEnvironment in lib/Bio/Grid/Run/SGE/Util/ExampleEnvironment.pm
Mtest in misc/Mtest.pm



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