50 results (0.201 seconds)
Emmanouil "Manolis" Maragkakis
Modules
GenOO - A Modern Perl Framework for High Throughput Sequencing analysis
GenOO::Data::DB::Connector - Connector to database object, with features
GenOO::Data::DB::DBIC::Species::Schema::SampleResultBase::v1 - DBIC Result class for sequenced reads
GenOO::Data::DB::DBIC::Species::Schema::SampleResultBase::v2 - DBIC Result class for sequenced reads
GenOO::Data::DB::DBIC::Species::Schema::SampleResultBase::v3 - DBIC Result class for sequenced reads
GenOO::Data::File::BED - Object implementing methods for accessing bed formatted files (http://genome.ucsc.edu/FAQ/FAQformat#format1)
GenOO::Data::File::BED::Record - Object representing a record of a bed file
GenOO::Data::File::FASTA - Object implementing methods for accessing fasta formatted files (http://genome.ucsc.edu/FAQ/FAQformat#format1)
GenOO::Data::File::FASTA::Record - Object representing a record of a fasta file
GenOO::Data::File::FASTQ - Object implementing methods for accessing fastq formatted files
GenOO::Data::File::FASTQ::Record - Object representing a record of a fastq file
GenOO::Data::File::GFF - Object implementing methods for accessing GFF formatted files (http://www.sanger.ac.uk/resources/software/gff/spec.html)
GenOO::Data::File::GFF::Record - Object representing a record of a gff file
GenOO::Data::File::SAM - Object implementing methods for accessing SAM formatted files
GenOO::Data::File::SAM::Cigar - Role that corresponds to the SAM file CIGAR string
GenOO::Data::File::SAM::CigarAndMDZ - Role that combines SAM CIGAR string with MD:Z tag
GenOO::Data::File::SAM::MDZ - Role - The MD:Z tag in a SAM file
GenOO::Data::File::SAM::Record - Object representing a record of a sam file
GenOO::Data::Structure::DoubleHashArray - Object for a data structure which corresponds of a 2D hash whose values are references to array
GenOO::Exon - Exon object
GenOO::Gene - Gene object
GenOO::GeneCollection::Factory - Factory for creating GenOO::RegionCollection objects
GenOO::GeneCollection::Factory::FromTranscriptCollection - Factory for creating GenOO::GeneCollection object from a Transcript Collection and a hash{transcript_name} = genename
GenOO::GeneCollection::Factory::GTF - Factory to create GeneCollection from a GTF file
GenOO::GenomicRegion - Object that corresponds to a region on a genome
GenOO::Helper::MyMath - A collection of useful mathematical methods
GenOO::Intron - Intron object
GenOO::Junction - A junction (eg exon-exon) object with features
GenOO::Module::Search::Binary - Module that offers methods for searching in an array using binary search
GenOO::Region - Role that represents a region on a reference sequence
GenOO::RegionCollection - Role for a collection of GenOO::Region objects
GenOO::RegionCollection::Factory - Factory for creating GenOO::RegionCollection objects
GenOO::RegionCollection::Factory::BED - Factory for creating GenOO::RegionCollection object from a BED file
GenOO::RegionCollection::Factory::DBIC - Factory for creating GenOO::RegionCollection object from a database table
GenOO::RegionCollection::Factory::RegionArray - Factory for creating a RegionCollection from array of regions
GenOO::RegionCollection::Factory::Requires - Role for a concrete factory that creates GenOO::RegionCollection objects
GenOO::RegionCollection::Factory::SAM - Factory for creating GenOO::RegionCollection object from a SAM file
GenOO::RegionCollection::Type::DBIC - Class for a collection of GenOO::Region objects stored in a database.
GenOO::RegionCollection::Type::DoubleHashArray - Object for a collection of GenOO::Region objects, with features
GenOO::Spliceable - Role for a region that can be spliced
GenOO::Transcript - Corresponds to a gene transcript
GenOO::Transcript::CDS - Transcript part (coding sequence)
GenOO::Transcript::Part - A functional region within a transcript consisting of spliceable elements
GenOO::Transcript::UTR3 - Transcript part (coding sequence)
GenOO::Transcript::UTR5 - Transcript part (coding sequence)
GenOO::TranscriptCollection - Role for a collection of GenOO::Transcript objects
GenOO::TranscriptCollection::Factory - Factory for creating GenOO::TranscriptCollection objects
GenOO::TranscriptCollection::Factory::FromGeneCollection - Factory to create GenOO::TranscriptCollection object from a GeneCollection
GenOO::TranscriptCollection::Factory::GTF - Factory to create TranscriptCollection from a GTF file



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