Changes for version 0.50 - 2003-12-16

  • Big news is that a version of Shuai Weng's (from SGD) GO::View module has been added in, which can create a graphic representation of the results of GO::TermFinder. This gives a much better way to intuitively look at the results. A bunch of other stuff was added in to support this, including a batch processor that will generate an html pages with a graphic for any number of input lists of genes. See and examples.html in the examples directory.
  • GO::TermFinder
  • Fixed a nasty bug that was actually due to a bug in Perl (I swear!) that meant that clients of the GO::TermFinder would have a runtime error if they did not recognize one or more of the genes that it was provided with. This should no longer happen, and I have written additional tests to make sure it never happens again!


abstract base class defining interface for how Annotation information should be provided
parses a gene annotation file
provides information about a node in the Gene Ontology
abstract base class providing API for the provision on Gene Ontology information
Provides API for retrieving data from Gene Ontology files
identify GO nodes that annotate a group of genes with a significant p-value
prints an html table of the results of GO::TermFinder
simply utility module for dealing with file parsing
provides some general utilities for clients of other GO classes
a helper class for GO::View to deal with the image