tag-loc-ids.pl - Compute seq id organelle tags based on sequence identity
version 0.210170
tag-loc-ids.pl <infiles> [optional arguments]
Path to input FASTA files [repeatable argument].
Substring(s) to strip from infile basenames before attempting to derive other infile (e.g., IDM files) and outfile names [default: none].
Min percentage identity to consider a hit.
Suffix to append to infile basenames for deriving outfile names [default: none]. When not specified, outfile names are taken from infiles but original infiles are preserved by being appended a .bak suffix.
If activated produce a list of sequence IDs for pruning of alignment ('.idl' file). By default, output is a '.idm' file for renaming sequences in original fasta/ali file.
for Euclid: loc.type: str
Cellular compartment you want to work with.
Prot count per plastome file.
for Euclid: str.type: str
Print the usual program information
Denis BAURAIN <denis.baurain@uliege.be>
Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>
This software is copyright (c) 2021 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::MUST::Tools::Mcl, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MUST::Tools::Mcl
CPAN shell
perl -MCPAN -e shell install Bio::MUST::Tools::Mcl
For more information on module installation, please visit the detailed CPAN module installation guide.