NAME

Bio::MUST::Core::Seq - Nucleotide or protein sequence

VERSION

version 0.191300

SYNOPSIS

    # TODO

DESCRIPTION

    # TODO

METHODS

clone

is_protein

is_rna

is_aligned

is_subseq_of

is_superseq_of

first_site

uc

recode_seq

degap

gapify

spacify

trim

pad_to

clear_new_tag

all_states

state_at

delete_site

is_missing

is_gap

reverse_complemented_seq

spliced_seq

codons

raw_seq

nomiss_seq_len

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

CONTRIBUTORS

  • Catherine COLSON <ccolson@doct.uliege.be>

  • Arnaud DI FRANCO <arnaud.difranco@gmail.com>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.