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Bioinfo-0.1.7
River stage zero No dependents
++
/ Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit

NAME

Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit - submit blast after splitting a fasta file into multiple files;

VERSION

version 0.1.7

SYNOPSIS

  use Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit;

  Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit->new_with_cmd;

DESCRIPTION

this module splits a fasta file into multiple files, then submit these files on parallel.

ATTRIBUTES

input

The input file is a file of fasta format

num

number of files that the fasta file will be split

db

the database that blast will use

type

blast

cpu

outdir

prefix

the prefix of the split file

METHODS

execute

AUTHOR

Yan Xueqing <yanxueqing621@163.com>

COPYRIGHT AND LICENSE

This software is copyright (c) 2017 by Yan Xueqing.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.